Welcome to serpentine’s documentation!

Tutorial

• Serpentine binning tutorial
  • Dependencies
  • Testing
  • Binning prepared Hi-C datasets
  • Using the library

Demo

• Serpentine binning
  • Loading the library
  • Filtering of the data
  • Finding the binning threshold and the de-trending constant
  • Serpenting binning the data
  • Checking the results
  • Checking the differential analysis

Reference API

• serpentine
  • serpentine package

Indices and tables

• Index
• Module Index
• Search Page